MUTAGEN: Multi-User Tool for Annotating GENomes
نویسندگان
چکیده
SUMMARY MUTAGEN is a free prokaryotic annotation system. It offers the advantages of genome comparison, graphical sequence browsers, search facilities and open-source for user-specific adjustments. The web-interface allows several users to access the system from standard desktop computers. The Sulfolobus acidocaldarius genome, and several plasmids and viruses have so far been analysed and annotated using MUTAGEN. AVAILABILITY MUTAGEN is released as open-source software under GPL. The code is available for download and/or contribution at http://dac.molbio.ku.dk/bioinformatics/MUTAGEN/
منابع مشابه
Viewing and Annotating Sequence Data with Artemis
Artemis is a widely used software tool for annotating and viewing sequence data. No database is required to use Artemis. Instead, individual sequence data files can be analysed with little or no formatting, making it particularly suited to the study of small genomes and chromosomes, and straightforward for a novice user to get started. Since its release in 1999, Artemis has been used to annotat...
متن کاملRASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to annotate bacterial and archaeal genomes. It works by offering a standard software pipeline for identifying genomic features (i.e., protein-encoding genes and RNA) and annotating their functions. Recently, in order to make RAST a more useful research tool and to keep pace with advancements in bioinforma...
متن کاملEXMARaLDA and the FOLK tools - two toolsets for transcribing and annotating spoken language
This paper presents two toolsets for transcribing and annotating spoken language: the EXMARaLDA system, developed at the University of Hamburg, and the FOLK tools, developed at the Institute for the German Language in Mannheim. Both systems are targeted at users interested in the analysis of spontaneous, multi-party discourse. Their main user community is situated in conversation analysis, prag...
متن کاملgSearch: a fast and flexible general search tool for whole-genome sequencing
BACKGROUND Various processes such as annotation and filtering of variants or comparison of variants in different genomes are required in whole-genome or exome analysis pipelines. However, processing different databases and searching among millions of genomic loci is not trivial. RESULTS gSearch compares sequence variants in the Genome Variation Format (GVF) or Variant Call Format (VCF) with a...
متن کاملA User Interface for Video Annotation on Multi-Touch Devices
We present a new user interface, which allows anyone to easily, accurately (true to original) and efficiently annotate objects and faces in videos. We identified two key requirements our annotation tool should aim for: accuracy and time efficiency. Accuracy is achieved by annotating a video as fine-grained as possible. A fine-grained annotation also aids to accurately annotate transient and fas...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Bioinformatics
دوره 19 18 شماره
صفحات -
تاریخ انتشار 2003